Biosu42 «SECURE – 2024»

Before you begin, you need to know exactly what motherboard you have. Do not guess, as installing the wrong BIOS can "brick" your computer.

  • Method 2 (Command Prompt):

    • Assume the executable is biosu42 and input files are FASTA or FASTQ.

  • Convert formats (FASTA ↔ FASTQ or filtering by quality): biosu42

    biosu42 convert --input reads.fastq --output reads.fasta
biosu42 convert --input reads.fastq --output highq.fastq --min-mean-q 30

  • Filter sequences by length or pattern:

    biosu42 filter --input sequences.fasta --min-len 200 --max-len 2000 --output filtered.fa
biosu42 filter --input sequences.fasta --motif ATGCGT --output motif_hits.fa

  • Batch processing with BED intervals:

    biosu42 extract --input genome.fa --bed intervals.bed --output extracted_regions.fa

  • Compute k-mer frequencies:

    biosu42 kmers --input sequences.fasta --k 5 --top 20

    • Assuming biosu42 is distributed via pip: Before you begin, you need to know exactly

    If it’s provided as a binary release, download the appropriate archive, unpack, make executable, and add to PATH:

    tar -xzf biosu42-<version>-linux.tar.gz
chmod +x biosu42
mv biosu42 /usr/local/bin/
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